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A

addChildGeometry(T, int, int) - Method in class org.lsst.ccs.utilities.ccd.Geometry
Add a child to the grid to a given position in the parallel,serial coordinate system.
addFitsHeaderMetadataProvider(FitsHeaderMetadataProvider) - Static method in class org.lsst.ccs.utilities.image.FitsFileWriter
Add a FitsHeaderMetadataProvider to be used when writing out headers when writing out fits files.
addGeometry(T, int, int) - Method in class org.lsst.ccs.utilities.ccd.Geometry
Add a Geometry to this Geometry at a given (x,y) location.
addGeometryToGrid(Segment, int, int) - Method in class org.lsst.ccs.utilities.ccd.CCD
Add a Segment to this CCD at a given serial and parallel position.
addGeometryToGrid(Raft, int, int) - Method in class org.lsst.ccs.utilities.ccd.FocalPlane
 
addGeometryToGrid(T, int, int) - Method in class org.lsst.ccs.utilities.ccd.Geometry
This method must be implemented by all classes extending Geometry.
addGeometryToGrid(Reb, int, int) - Method in class org.lsst.ccs.utilities.ccd.Raft
 
addGeometryToGrid(CCD, int, int) - Method in class org.lsst.ccs.utilities.ccd.Reb
 
addGeometryToGrid(Geometry, int, int) - Method in class org.lsst.ccs.utilities.ccd.Segment
 
addMetaData(String, String, Object) - Method in class org.lsst.ccs.utilities.image.MetaDataSet
Add a meta-data entry to a named meta-data object.
addMetaDataMap(String, Map<String, Object>) - Method in class org.lsst.ccs.utilities.image.MetaDataSet
Add a set of meta-data to a named meta-data object.
addMetaDataSet(MetaDataSet) - Method in class org.lsst.ccs.utilities.image.MetaDataSet
Add a MetaDataSet to an existing MetaDataSet.
addProperties(String, Properties) - Method in class org.lsst.ccs.utilities.image.MetaDataSet
Add a set of properties to a MetaDataSet.
addRawImageDataListener(RawImageDataListener, RawImageDataProvider) - Static method in interface org.lsst.ccs.utilities.ccd.image.data.RawImageDataProvider
Add a RawImageDataListener for a given RawImagedataProvider.
addReb(Reb, int) - Method in class org.lsst.ccs.utilities.ccd.Raft
Dedicated method to add a reb to this Raft.
addSpecFile(String) - Static method in class org.lsst.ccs.utilities.image.FitsHeadersSpecifications
Add the a header specification file.
addSpecFile(String, String) - Static method in class org.lsst.ccs.utilities.image.FitsHeadersSpecifications
Add the a header specification file.
asyncWrite(int, ByteBuffer) - Method in class org.lsst.ccs.utilities.image.FitsFileWriter
 

B

bits() - Method in enum org.lsst.ccs.utilities.ccd.image.data.RawImageData.BitsPerPixel
 
bytes() - Method in enum org.lsst.ccs.utilities.ccd.image.data.RawImageData.BitsPerPixel
 

C

CCD - Class in org.lsst.ccs.utilities.ccd
A class describing a CCD.
CCDGeometryConstants - Class in org.lsst.ccs.utilities.ccd
An object that defines CCD specific geometrical constants.
CCDGeometryConstants(SegmentGeometryConstants, double, double) - Constructor for class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
Build a CCDGemetryConstants object describing a CCD geometry constants.
CCDTransform - Interface in org.lsst.ccs.utilities.ccd
Allows transforms between CCD coordinate system and CCD segment (amplifier) coordinate systems.
CCDTransform.ActiveTransform - Class in org.lsst.ccs.utilities.ccd
A CCDTransform which only considers active pixels for the absolute x,y coordinates.
CCDTransform.GlobalTransform - Class in org.lsst.ccs.utilities.ccd
A CCDTransform which considers all pixels for the absolute x,y coordinates.
CCDTransform.PixelType - Enum in org.lsst.ccs.utilities.ccd
Enumerate the different types of pixel that can be read out.
CCDType - Class in org.lsst.ccs.utilities.ccd
A class that defines the type of a CCD.
CCDType(String, CCDGeometryConstants) - Constructor for class org.lsst.ccs.utilities.ccd.CCDType
Create a CCDType.
CCDTypeUtils - Class in org.lsst.ccs.utilities.ccd
CCD Type utilities.
CCDTypeUtils() - Constructor for class org.lsst.ccs.utilities.ccd.CCDTypeUtils
 
changeCCDTypeForGeometry(T, CCDType) - Static method in class org.lsst.ccs.utilities.ccd.CCDTypeUtils
Change the type of a CCD.
CheckeredPatternGenerator - Class in org.lsst.ccs.utilities.image.patterns
A PatternGenerator that creates checkered pattern with sinusoidal fluctuations of a given amplitude over a baseline.
checksum(byte[]) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Calculate the Seaman-Pence 32-bit 1's complement checksum over the byte stream.
Checksum() - Constructor for class org.lsst.ccs.utilities.image.FitsCheckSum.Checksum
 
checksumDecode(String) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Decodes an encoded checksum, the opposite of FitsCheckSum.checksumEncode(long)
checksumEnc(long, boolean) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Encode a 32bit integer according to the Seaman-Pence proposal.
checksumEncode(long) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Encode the given checksum, including the rotating the result right by one byte.
close() - Method in class org.lsst.ccs.utilities.image.FitsFileWriter
 
close() - Method in class org.lsst.ccs.utilities.image.samp.SampUtils
 
completedHeaderMetadata(ImageSet) - Method in interface org.lsst.ccs.utilities.image.FitsHeaderMetadataProvider
Method invoked when the headers have been written for this ImageSet.
computeChecksum(ByteBuffer) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Compute a FITS check sum from a ByteBuffer
createCCD(CCDType) - Static method in class org.lsst.ccs.utilities.ccd.CCD
Utility method to create a CCD for a given CCDType filled with Segments.
createImageSetForCCD(CCD) - Static method in class org.lsst.ccs.utilities.image.FitsHeaderUtilities
Create the default ImageSet for the given CCD.
createPatternGenerator(String) - Static method in class org.lsst.ccs.utilities.image.patterns.PatternGeneratorFactory
Creates a new PatternGenerator for the given name.
createRaft(CCDType) - Static method in class org.lsst.ccs.utilities.ccd.Raft
Utility static method to create a fully Reb/CCD populated Raft for the provided CCD type.
createReb(CCDType, BitSet) - Static method in class org.lsst.ccs.utilities.ccd.Reb
Utility method to create a Reb populated with the specified CCDs for the given type.
createReb(CCDType) - Static method in class org.lsst.ccs.utilities.ccd.Reb
Utility method to create a fully populated Reb for a given CCD type.

D

DateUtils - Class in org.lsst.ccs.utilities.image
Utilities for dealing with Dates/Times.
DefaultImageSet - Class in org.lsst.ccs.utilities.image
A default implementation of ImageSet.
DefaultImageSet(CCD, ReadOutParameters) - Constructor for class org.lsst.ccs.utilities.image.DefaultImageSet
 
display(File) - Method in class org.lsst.ccs.utilities.image.samp.SampUtils
Ask ds9 to display a fits file, assuming that the fits file is directly readable by ds9 and is mosaic iraf format .
ds9Get(String, int) - Method in class org.lsst.ccs.utilities.image.samp.SampUtils
Send a ds9.get command over SAMP.
ds9Set(String, URI, int) - Method in class org.lsst.ccs.utilities.image.samp.SampUtils
Send a ds9.set command over SAMP.

E

E2VCCDType - Class in org.lsst.ccs.utilities.ccd
An E2V CCD type.
E2VCCDType() - Constructor for class org.lsst.ccs.utilities.ccd.E2VCCDType
Create an E2V CCDType object.
exposeGeometry() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
Expose the current Geometry to a simulated image.
exposeGeometryToGeneratedImage(Geometry<?>, GeneratedImage) - Static method in class org.lsst.ccs.utilities.image.patterns.PatternGeneratorFactory
Expose a Geometry object to a generated image.
exposeToImage(ImagePixelData) - Method in interface org.lsst.ccs.utilities.ccd.ImageSensitiveArea
Expose the current object to the generated ImagePixelData.
exposeToImage(ImagePixelData) - Method in class org.lsst.ccs.utilities.ccd.Segment
Methods required by ImageSensitiveArea.

F

findGeometry(String) - Method in class org.lsst.ccs.utilities.ccd.Geometry
Find a Geometry by name.
findParentOfType(Class) - Method in class org.lsst.ccs.utilities.ccd.Geometry
Find the closest containing Geometry of a given type.
FitsCheckSum - Class in org.lsst.ccs.utilities.image
A replacement for the FitsCheckSum implemented in nom.tam.fits.utilities.FitsCheckSum.
FitsCheckSum.Checksum - Class in org.lsst.ccs.utilities.image
Encapsulation of a FITS check sum.
FitsFileWriter - Class in org.lsst.ccs.utilities.image
A utility for writing FITS files following LSST conventions.
FitsFileWriter(File, ImageSet) - Constructor for class org.lsst.ccs.utilities.image.FitsFileWriter
Construct a FitsFileWriter object for the provided ImageSet.
FitsFileWriter(File, ImageSet, MetaDataSet) - Constructor for class org.lsst.ccs.utilities.image.FitsFileWriter
 
FitsFileWriter(File, ImageSet, MetaDataSet, RawImageData.BitsPerPixel) - Constructor for class org.lsst.ccs.utilities.image.FitsFileWriter
 
FitsHeaderMetadataProvider - Interface in org.lsst.ccs.utilities.image
An interface to provide MetaDataSets to fill the content of Fits Headers.
FitsHeadersSpecifications - Class in org.lsst.ccs.utilities.image
Utility class for the generation of header specifications objects.
FitsHeadersSpecifications() - Constructor for class org.lsst.ccs.utilities.image.FitsHeadersSpecifications
 
FitsHeaderUtilities - Class in org.lsst.ccs.utilities.image
Utility class for the generation of header specifications objects.
FitsHeaderUtilities() - Constructor for class org.lsst.ccs.utilities.image.FitsHeaderUtilities
 
FocalPlane - Class in org.lsst.ccs.utilities.ccd
A Geometry class defining the Camera Focal Plane.
FocalPlane() - Constructor for class org.lsst.ccs.utilities.ccd.FocalPlane
Build a Camera FocalPlane object.

G

GeneratedImage - Class in org.lsst.ccs.utilities.image.patterns
An Image generated by PatternGenerators.
GeneratedImage(int[][], double) - Constructor for class org.lsst.ccs.utilities.image.patterns.GeneratedImage
 
generateImage(int, int, Map<String, String>) - Method in class org.lsst.ccs.utilities.image.patterns.CheckeredPatternGenerator
 
generateImage(int, int, Map<String, String>) - Method in class org.lsst.ccs.utilities.image.patterns.ImagePatternGenerator
 
generateImage(int, int, Map<String, String>) - Method in class org.lsst.ccs.utilities.image.patterns.NoisePatternGenerator
 
generateImage(int, int, Map<String, String>) - Method in class org.lsst.ccs.utilities.image.patterns.PatternGenerator
Generate a GeneratedImage with the provided width and height.
generateImage(int, int, Map<String, String>) - Method in class org.lsst.ccs.utilities.image.patterns.RipplesPatternGenerator
 
generateImageForGeometry(Geometry<?>, String, Map<String, String>) - Static method in class org.lsst.ccs.utilities.image.patterns.PatternGeneratorFactory
Generate a simulated image for the given Geometry.
generateImageForGeometry() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
Geometry<T extends Geometry> - Class in org.lsst.ccs.utilities.ccd
Base Geometry: a rectangle inside which it is possible to add other Geometries.
Geometry(String, Dimension, int, int) - Constructor for class org.lsst.ccs.utilities.ccd.Geometry
Create a new Geometry with a maximum set of components in the (p,s) coordinate system.
Geometry(String, Dimension) - Constructor for class org.lsst.ccs.utilities.ccd.Geometry
Create a new Geometry with no children.
GeometryUtils - Class in org.lsst.ccs.utilities.ccd
A utility class to display a Geometry tree.
GeometryUtils() - Constructor for class org.lsst.ccs.utilities.ccd.GeometryUtils
 
get() - Method in interface org.lsst.ccs.utilities.image.ImageDataStream
Get the byte at the current position and then increment the position.
get(ImageWithGeometryViewer.SetGetImagePattern) - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
getAbsolutePoint(Point) - Method in class org.lsst.ccs.utilities.ccd.Geometry
Convert a point within this Geometry to the absolute coordinate system of the topmost Geometry.
getActiveAreaParallelSize() - Method in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
The CCD dimension, in pixels, of the active area along the parallel direction.
getActiveAreaSerialSize() - Method in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
The CCD dimension, in pixels, of the active area along the serial direction.
getActiveParallelSize() - Method in class org.lsst.ccs.utilities.ccd.CCD
The active parallel pixel size of this CCD for all the Segments.
getActiveSerialSize() - Method in class org.lsst.ccs.utilities.ccd.CCD
The active serial pixel size of this CCD for all the Segments.
getActiveTransform(CCD, ReadOutParameters) - Static method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Create a CCDTransform which only considers active pixels for the absolute x,y coordinates.
getActiveTransform(CCD) - Static method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Create a CCDTransform which only considers active pixels for the absolute x,y coordinates.
getAdditionalExtendedHeaderMetadata(ImageSet, String) - Method in interface org.lsst.ccs.utilities.image.FitsHeaderMetadataProvider
Get the metadata for an additional extended Headers by key for a given ImageSet.
getBufferedImageFromRaster(WritableRaster) - Static method in class org.lsst.ccs.utilities.image.patterns.PatternGenerator
 
getCCD() - Method in class org.lsst.ccs.utilities.image.DefaultImageSet
 
getCCD() - Method in interface org.lsst.ccs.utilities.image.ImageSet
Get the ID for this ImageSet.
getCCDGeometryConstants() - Method in class org.lsst.ccs.utilities.ccd.CCDType
Get the CCDGeometryConstants for this CCDType.
getCCDPrimaryHeaders(CCD) - Static method in class org.lsst.ccs.utilities.image.FitsHeaderUtilities
Create fits headers for the primary header for the given Object.
getCCDTotalParallelSize(CCD, ReadOutParameters) - Static method in class org.lsst.ccs.utilities.image.ReadOutParameters
Utility method to get a CCD full parallel size for a given ReadOutParameter.
getCCDTotalSerialSize(CCD, ReadOutParameters) - Static method in class org.lsst.ccs.utilities.image.ReadOutParameters
Utility method to get a CCD full serial size for a given ReadOutParameter.
getChannel() - Method in class org.lsst.ccs.utilities.ccd.Segment
The Segment channel number.
getCheckSum() - Method in class org.lsst.ccs.utilities.image.FitsCheckSum.Checksum
 
getChild(int, int) - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get child at position (p,s).
getChildrenList() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the list of children for this Geometry.
getChildrenWithAbsoluteCoordinates() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get a map for all the children contained in this Geometry with the corresponding Point which represent the location of the child Geometry in the topmost geometry.
getComment() - Method in class org.lsst.ccs.utilities.image.HeaderSpecification.HeaderLine
The Comment as it will be written in the fits file.
getDataExtendedHeaderMetadata(ImageSet, int) - Method in interface org.lsst.ccs.utilities.image.FitsHeaderMetadataProvider
Get the extended header meta-data by index for a given ImageSet.
getDataType() - Method in class org.lsst.ccs.utilities.image.HeaderSpecification.HeaderLine
The data type for this HeaderLine.
getDoubleParameter(String, Map<String, String>, double) - Method in class org.lsst.ccs.utilities.image.patterns.PatternGenerator
 
getDS9Version() - Method in class org.lsst.ccs.utilities.image.samp.SampUtils
Get a list of versions of DS9 clients connected to hub.
getGap_inx() - Method in class org.lsst.ccs.utilities.ccd.RaftGeometryConstants
Get the inter CCD gap along the parallel direction in pixels.
getGap_iny() - Method in class org.lsst.ccs.utilities.ccd.RaftGeometryConstants
Get the inter CCD gap along the serial direction in pixels.
getGap_outx() - Method in class org.lsst.ccs.utilities.ccd.RaftGeometryConstants
Get the gap at the edge of the Raft along the parallel direction in pixels.
getGap_outy() - Method in class org.lsst.ccs.utilities.ccd.RaftGeometryConstants
Get the gap at the edge of the Raft along the serial direction in pixels.
getGeometryAbsolutePosition() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the absolute location of this Geometry with respect to the topmost geometry, that is the one without a parent.
getGeometryPoint(Geometry) - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the location Point of a child Geometry within this Geometry.
getGlobalTransform(CCD, ReadOutParameters) - Static method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Create a CCDTransform which considers all pixels for the absolute x,y coordinates.
getGlobalTransform(CCD) - Static method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Create a CCDTransform which considers all pixels for the absolute x,y coordinates.
getGlobalX() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getGlobalX() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
The global coordinate corresponding to the currently selected coordinate.
getGlobalX() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getGlobalY() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getGlobalY() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
The global coordinate corresponding to the currently selected coordinate.
getGlobalY() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getHeader(String) - Method in class org.lsst.ccs.utilities.image.HeaderSpecification
Get a specific HeaderLine object specifying the full definition for a given header keyword.
getHeaders() - Method in class org.lsst.ccs.utilities.image.HeaderSpecification
Get the full collection of HeaderLines for this HeaderSpecification.
getHeaderSpecifications() - Static method in class org.lsst.ccs.utilities.image.FitsHeadersSpecifications
Get the HeaderSpecifications as built from the read spec files.
getHeight() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the Geometry height;
getHeight() - Method in interface org.lsst.ccs.utilities.image.ImagePixelData
Get the height of the Image.
getHeight() - Method in class org.lsst.ccs.utilities.image.patterns.GeneratedImage
 
getImageData() - Method in class org.lsst.ccs.utilities.ccd.image.data.RawImageData
 
getImagePixelData() - Method in interface org.lsst.ccs.utilities.ccd.ImageSensitiveArea
Get the ImagePixelData for this object, if present.
getImagePixelData() - Method in class org.lsst.ccs.utilities.ccd.Segment
 
getIntParameter(String, Map<String, String>, int) - Method in class org.lsst.ccs.utilities.image.patterns.PatternGenerator
 
getKeyword() - Method in class org.lsst.ccs.utilities.image.HeaderSpecification.HeaderLine
The keyword name as it will be written in the fits file.
getMaxValue() - Method in interface org.lsst.ccs.utilities.image.ImagePixelData
Get the maximum value of the contained data.
getMaxValue() - Method in class org.lsst.ccs.utilities.image.patterns.GeneratedImage
Get the maximum value of the contained data.
getMetaName() - Method in class org.lsst.ccs.utilities.image.HeaderSpecification.HeaderLine
 
getName() - Method in class org.lsst.ccs.utilities.ccd.CCDType
The name of this CCDType.
getName() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the Geometry name
getName() - Method in class org.lsst.ccs.utilities.ccd.Reb
 
getName() - Method in class org.lsst.ccs.utilities.image.HeaderSpecification
The name of the HeaderSpecification.
getName() - Method in class org.lsst.ccs.utilities.image.patterns.PatternGenerator
The name of the pattern.
getNumberOfChildren() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the number of children added to this Geometry.
getNumberOfImages() - Method in interface org.lsst.ccs.utilities.image.ImageSet
Get the number of Images in the set.
getOverCols() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the read columns in over scan.
getOverRows() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the read columns for the second sub-array.
getParallel() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getParallel() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
The parallel coordinate of the currently selected pixel within the current CCD segment.
getParallel() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getParallelChildrenCount() - Method in class org.lsst.ccs.utilities.ccd.Geometry
The maximum number of children in the parallel direction.
getParallelPosition() - Method in class org.lsst.ccs.utilities.ccd.Geometry
The parallel position of this Geometry within its parent.
getParallelReadPixels() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Utility method to get the the number of pixels read in the parallel direction.
getParameter(String, Map<String, String>) - Method in class org.lsst.ccs.utilities.image.patterns.PatternGenerator
 
getParent() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the parent of this Geometry.
getPhysicalAreaParallelSize() - Method in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
The CCD dimension, in pixels, of the physical area along the parallel direction.
getPhysicalAreaParallelSize() - Method in class org.lsst.ccs.utilities.ccd.RaftGeometryConstants
 
getPhysicalAreaSerialSize() - Method in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
The CCD dimension, in pixels, of the physical area along the serial direction.
getPixelData(int, int) - Method in interface org.lsst.ccs.utilities.image.ImagePixelData
Get the data sample for pixel (x,y).
getPixelData(int, int) - Method in class org.lsst.ccs.utilities.image.patterns.GeneratedImage
 
getPixelType() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getPixelType() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
The type of pixel corresponding to the currently selected coordinate.
getPixelType() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getPostCols() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the discarded columns after the ones that have been read.
getPostRows() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the discarded rows after the ones that have been read.
getPreCols() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the skipped columns.
getPreRows() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the skipped rows.
getPrimaryHeaderMetadata(ImageSet) - Method in interface org.lsst.ccs.utilities.image.FitsHeaderMetadataProvider
Get the primary Header MetaDataSet for a given ImageSet
getRaftGeometryConstants() - Method in class org.lsst.ccs.utilities.ccd.Raft
Get the RaftGeometryConstants object for this Raft.
getRaftGeometryConstants() - Method in class org.lsst.ccs.utilities.ccd.Reb
 
getRaftx() - Method in class org.lsst.ccs.utilities.ccd.RaftGeometryConstants
Get the Raft full size in the parallel direction in pixels.
getRafty() - Method in class org.lsst.ccs.utilities.ccd.RaftGeometryConstants
Get the Raft full size in the serial direction in pixels.
getRawImageData(ReadOutParameters) - Method in interface org.lsst.ccs.utilities.ccd.image.data.RawImageDataProvider
Get the RawImageData for this object.
getRawImageData(ReadOutParameters) - Method in class org.lsst.ccs.utilities.ccd.Reb
 
getRawImageData(ReadOutParameters) - Method in class org.lsst.ccs.utilities.ccd.Segment
Get the buffer of image data accumulated by this Segment.
getReadCols() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the read columns.
getReadCols2() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the read columns.
getReadOutParameters() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getReadOutParameters() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Get the ReadOutParameters object used internally by the CCDTransform instance.
getReadOutParameters() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getReadOutParameters() - Method in class org.lsst.ccs.utilities.image.DefaultImageSet
 
getReadOutParameters() - Method in interface org.lsst.ccs.utilities.image.ImageSet
Get the ReadOutParameters used to acquire this ImageSet.
getReadRows() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the number of the read rows.
getSample() - Method in class org.lsst.ccs.utilities.ccd.image.data.RawImageData
 
getSegment() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getSegment() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
The CCD segment corresponding to the currently selected coordinate.
getSegment() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getSegmentHeaders(Segment, ReadOutParameters) - Static method in class org.lsst.ccs.utilities.image.FitsHeaderUtilities
Create fits headers for a Segment given the provided ReadOutParameters.
getSegmentParallelActiveSize() - Method in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
Get the Segment parallel active size in pixels.
getSegmentParallelActiveSize() - Method in class org.lsst.ccs.utilities.ccd.Segment
The Segment active parallel size in pixels.
getSegments() - Method in class org.lsst.ccs.utilities.ccd.CCD
Get the ordered list for all the Segments in this CCD.
getSegmentSerialActiveSize() - Method in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
Get the Segment serial active size in pixels.
getSegmentSerialActiveSize() - Method in class org.lsst.ccs.utilities.ccd.Segment
The Segment active serial size in pixels.
getSerial() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getSerial() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
The serial position of the currently selected pixel within the current CCD segment.
getSerial() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getSerialChildrenCount() - Method in class org.lsst.ccs.utilities.ccd.Geometry
The maximum number of children in the serial direction.
getSerialPosition() - Method in class org.lsst.ccs.utilities.ccd.Geometry
The serial position of this Geometry within its parent.
getSerialPrescan() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the serial prescan size.
getSerialReadPixels() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Utility method to get the the number of pixels read in the serial direction.
getSerialRegister() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Utility method to get the serial register size.
getStringParameter(String, Map<String, String>, String) - Method in class org.lsst.ccs.utilities.image.patterns.PatternGenerator
 
getTotalParallelSize() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the total parallel size in pixels.
getTotalSerialSize() - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Get the total serial size in pixels.
getType() - Method in class org.lsst.ccs.utilities.ccd.CCD
Get the CCDType for this CCD.
getUniqueId() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get this Geometry unique id.
getValue(String) - Method in class org.lsst.ccs.utilities.image.MetaDataSet
 
getValue(String, String) - Method in class org.lsst.ccs.utilities.image.MetaDataSet
 
getWidth() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Get the Geometry width.
getWidth() - Method in interface org.lsst.ccs.utilities.image.ImagePixelData
Get the width of the Image.
getWidth() - Method in class org.lsst.ccs.utilities.image.patterns.GeneratedImage
 
getX() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getX() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Get the CCD x coordinate
getX() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
getY() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
getY() - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Get the CCD selected y coordinate system
getY() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 

H

hasChildren() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Check if this Geometry has children.
hasParent() - Method in class org.lsst.ccs.utilities.ccd.Geometry
Check if this Geometry has a Parent.
hasPixelData() - Method in interface org.lsst.ccs.utilities.ccd.ImageSensitiveArea
Check if this object has data.
hasPixelData() - Method in class org.lsst.ccs.utilities.ccd.Segment
 
HeaderSpecification - Class in org.lsst.ccs.utilities.image
A specification for a fits file header.
HeaderSpecification(String, InputStream) - Constructor for class org.lsst.ccs.utilities.image.HeaderSpecification
 
HeaderSpecification(String, Reader) - Constructor for class org.lsst.ccs.utilities.image.HeaderSpecification
 
HeaderSpecification.DataType - Enum in org.lsst.ccs.utilities.image
 
HeaderSpecification.HeaderLine - Class in org.lsst.ccs.utilities.image
A Class defining each Header line contained in a HeaderSpecification.

I

ImageDataStream - Interface in org.lsst.ccs.utilities.image
PROTOTYPE INTERFACE FOR GENERALIZING IMAGE DATA STREAMS IN AN ATTEMPT TO AVOID UN-NECESSARY COPYING OF DATA An interface representing a stream of Image data that has been processed and ready to be written in a Fits file.
ImagePatternGenerator - Class in org.lsst.ccs.utilities.image.patterns
A PatternGenerator that creates a BufferedImage from an existing image.
ImagePixelData - Interface in org.lsst.ccs.utilities.image
Interface for data that can provide pixel data level image data.
ImageSensitiveArea - Interface in org.lsst.ccs.utilities.ccd
Interface to be implemented by Geometry objects that can be exposed to a ImagePixelData.
ImageSet - Interface in org.lsst.ccs.utilities.image
Represents a set of images read from the DAQ.
ImageWithGeometryViewer - Class in org.lsst.ccs.utilities.image.viewer
A test program to generate and visualize images with geometries.
ImageWithGeometryViewer() - Constructor for class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
ImageWithGeometryViewer.SetGetImagePattern - Enum in org.lsst.ccs.utilities.image.viewer
 
isReadoutDown() - Method in class org.lsst.ccs.utilities.ccd.Segment
Returns true if the Segment is read from top to bottom in the serial direction.
isReadoutDown() - Method in enum org.lsst.ccs.utilities.ccd.SegmentReadOutOrder
Returns true if the Segment is read from top to bottom in the serial direction.
isReadoutLeft() - Method in class org.lsst.ccs.utilities.ccd.Segment
Returns true if the Segment is read from left to right in the parallel direction.
isReadoutLeft() - Method in enum org.lsst.ccs.utilities.ccd.SegmentReadOutOrder
Returns true if the Segment is read from left to right in the parallel direction.
ITLCCDType - Class in org.lsst.ccs.utilities.ccd
An ITL CCD type.
ITLCCDType() - Constructor for class org.lsst.ccs.utilities.ccd.ITLCCDType
Create an ITL CCDType object.

L

listAvailablePatterns() - Static method in class org.lsst.ccs.utilities.image.patterns.PatternGeneratorFactory
List the patterns that are available for generating the Image.
listAvailablePatterns() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
List the patterns that are available for generating the Image.
LISTENERS - Static variable in interface org.lsst.ccs.utilities.ccd.image.data.RawImageDataProvider
Default static method and fields to support the listener/notification mechanism for classes implementing this interface.

M

main(String[]) - Static method in class org.lsst.ccs.utilities.image.demo.RaftsFitsWritingDemo
 
main(String[]) - Static method in class org.lsst.ccs.utilities.image.samp.SampUtils
Just for testing
main(String[]) - Static method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
MetaDataSet - Class in org.lsst.ccs.utilities.image
A MetaDataSet is used to provide values for the fits header keywords.
MetaDataSet() - Constructor for class org.lsst.ccs.utilities.image.MetaDataSet
 

N

name - Variable in class org.lsst.ccs.utilities.ccd.Geometry
 
NoisePatternGenerator - Class in org.lsst.ccs.utilities.image.patterns
A PatternGenerator that creates a random noise in a pixel block pattern varying from a baseline to a maximum amplitude in gray scale.
notifyRawImageDataListeners(RawImageDataProvider) - Static method in interface org.lsst.ccs.utilities.ccd.image.data.RawImageDataProvider
Notify the LISTENERS that RawImageData is available for a given RawImageDataProvider.

O

org.lsst.ccs.utilities.ccd - package org.lsst.ccs.utilities.ccd
This package contains classes for describing (idealized) CCD geometry.
org.lsst.ccs.utilities.ccd.image.data - package org.lsst.ccs.utilities.ccd.image.data
 
org.lsst.ccs.utilities.image - package org.lsst.ccs.utilities.image
This package contains utility routines for writing fits images in a format consistent with that documented in LCA-10140.
org.lsst.ccs.utilities.image.demo - package org.lsst.ccs.utilities.image.demo
 
org.lsst.ccs.utilities.image.patterns - package org.lsst.ccs.utilities.image.patterns
 
org.lsst.ccs.utilities.image.samp - package org.lsst.ccs.utilities.image.samp
This package contains utility routines for controlling image viewing applications such as ds9 using the SAMP protocol.
org.lsst.ccs.utilities.image.viewer - package org.lsst.ccs.utilities.image.viewer
 

P

PatternGenerator - Class in org.lsst.ccs.utilities.image.patterns
The base class for an Image pattern generator.
PatternGeneratorFactory - Class in org.lsst.ccs.utilities.image.patterns
A factory to generate patterns.
PatternGeneratorFactory() - Constructor for class org.lsst.ccs.utilities.image.patterns.PatternGeneratorFactory
 

R

Raft - Class in org.lsst.ccs.utilities.ccd
A Raft Geometry object.
Raft(CCDType) - Constructor for class org.lsst.ccs.utilities.ccd.Raft
Create a Raft object for a given type of CCD.
RaftGeometryConstants - Class in org.lsst.ccs.utilities.ccd
An object that defines Raft specific constants used to place CCDs into a Raft instance.
RaftsFitsWritingDemo - Class in org.lsst.ccs.utilities.image.demo
TEST CLASS FOR PARALLEL/SEQUENTIAL Fits file writing.
RaftsFitsWritingDemo() - Constructor for class org.lsst.ccs.utilities.image.demo.RaftsFitsWritingDemo
 
RawImageData - Class in org.lsst.ccs.utilities.ccd.image.data
A class for raw image data.
RawImageData(RawImageData.BitsPerPixel, ByteBuffer) - Constructor for class org.lsst.ccs.utilities.ccd.image.data.RawImageData
 
RawImageData.BitsPerPixel - Enum in org.lsst.ccs.utilities.ccd.image.data
The bitness of the data.
rawImageDataAvailable(RawImageDataProvider) - Method in interface org.lsst.ccs.utilities.ccd.image.data.RawImageDataListener
Call-back method when data is available for the RawImageDataProvider.
RawImageDataListener - Interface in org.lsst.ccs.utilities.ccd.image.data
A Listener for RawImageData.
RawImageDataProvider - Interface in org.lsst.ccs.utilities.ccd.image.data
Interface for objects that provide DataStreams.
RawImageDataProvider.InnerRawImageDataListener - Class in org.lsst.ccs.utilities.ccd.image.data
 
ReadOutParameters - Class in org.lsst.ccs.utilities.image
An object that defines the read out parameters used to acquire an ImageSet.
ReadOutParameters(CCDType, int, int, int, int, int, int, int, int, int) - Constructor for class org.lsst.ccs.utilities.image.ReadOutParameters
Segment redout parameters quantities according to https://jira.slac.stanford.edu/projects/LSSTCCSRAFTS/issues/LSSTCCSRAFTS-67.
ReadOutParameters(CCDType) - Constructor for class org.lsst.ccs.utilities.image.ReadOutParameters
Create a full frame ReadOutParameters object for a given type of CCD
Reb - Class in org.lsst.ccs.utilities.ccd
A Reb Geometry object.
remaining() - Method in interface org.lsst.ccs.utilities.image.ImageDataStream
Get the number of elements between the current position and the limit.
removeFitsHeaderMetadataProvider(FitsHeaderMetadataProvider) - Static method in class org.lsst.ccs.utilities.image.FitsFileWriter
 
removeRawImageDataListener(RawImageDataListener) - Static method in interface org.lsst.ccs.utilities.ccd.image.data.RawImageDataProvider
Remove a RawImageDataListener to this RawImageDataProvider.
RipplesPatternGenerator - Class in org.lsst.ccs.utilities.image.patterns
A PatternGenerator that creates ripples extending out from a center with constant amplitude and frequency over a mean baseline.

S

SampUtils - Class in org.lsst.ccs.utilities.image.samp
Utilities for communicating with DS9.
SampUtils(String, boolean) - Constructor for class org.lsst.ccs.utilities.image.samp.SampUtils
Create an instance of SampUtils and attempt to connect to a SAMP hub.
saveGeneratedImage(String) - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
Segment - Class in org.lsst.ccs.utilities.ccd
An class to represent a CCD Segment.
SegmentGeometryConstants - Class in org.lsst.ccs.utilities.ccd
An object that defines a Segment geometry constants.
SegmentGeometryConstants(int, int) - Constructor for class org.lsst.ccs.utilities.ccd.SegmentGeometryConstants
Segment geometry constants to LCA-13501
SegmentReadOutOrder - Enum in org.lsst.ccs.utilities.ccd
The Segment readout point with respect to the (parallel,serial) Camera Coordinate System.
SEGMENTS_ALONG_PARALLEL - Static variable in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
 
SEGMENTS_ALONG_SERIAL - Static variable in class org.lsst.ccs.utilities.ccd.CCDGeometryConstants
 
set(ImageWithGeometryViewer.SetGetImagePattern, String) - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
setChecksum(BasicHDU<?>) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Add or update the CHECKSUM keyword.
setGeometry(String, String) - Static method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
Set the store Geometry to be used for generating the image.
setImageGenerationParameter(String, String) - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
Set an Image generation parameter.
setOverCols(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the read columns in over scan.
setOverRows(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the read rows in over scan.
setParallelPosition(int) - Method in class org.lsst.ccs.utilities.ccd.Geometry
 
setParallelPosition(int) - Method in class org.lsst.ccs.utilities.ccd.Reb
 
setParent(Geometry) - Method in class org.lsst.ccs.utilities.ccd.Geometry
 
setPostCols(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the discarded columns after the ones that have been read.
setPostRows(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the discarded rows after the ones that have been read.
setPreCols(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the skipped columns.
setPreRows(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the skipped rows.
setReadCols(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the read columns.
setReadCols2(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the read columns for the second sub-array.
setReadRows(int) - Method in class org.lsst.ccs.utilities.image.ReadOutParameters
Set the number of the read rows.
setScaleFactor(double) - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
setSegmentSerialParallel(Segment, int, int) - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
setSegmentSerialParallel(Segment, int, int) - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
setSegmentSerialParallel(Segment, int, int) - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Set the current segment, and serial and parallel pixel position within the segment (in segment readout order).
setSerialPosition(int) - Method in class org.lsst.ccs.utilities.ccd.Geometry
 
setXY(int, int) - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
setXY(int, int) - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 
setXY(int, int) - Method in interface org.lsst.ccs.utilities.ccd.CCDTransform
Select the absolute x,y CCD coordinate.
showDataStreams() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
showGeometry() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
showGeometryTree(Geometry) - Static method in class org.lsst.ccs.utilities.ccd.GeometryUtils
Get a tree-like string representation of the full geometry tree for a given Geometry.
showGeometryTree(Geometry, int) - Static method in class org.lsst.ccs.utilities.ccd.GeometryUtils
Get a tree-like string representation of the geometry tree for a given Geometry to a given depth.
showGeometryTree() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
showImage() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 

T

toString() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.ActiveTransform
 
toString() - Method in class org.lsst.ccs.utilities.ccd.CCDTransform.GlobalTransform
 

U

updateChecksum(ByteBuffer, FitsCheckSum.Checksum) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Update a check sum from a ByteBuffer
updateCheckSum(Header, long) - Static method in class org.lsst.ccs.utilities.image.FitsCheckSum
Apply an incremental update to the checksum, as a result of changing one of more records

V

valueOf(String) - Static method in enum org.lsst.ccs.utilities.ccd.CCDTransform.PixelType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lsst.ccs.utilities.ccd.image.data.RawImageData.BitsPerPixel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lsst.ccs.utilities.ccd.SegmentReadOutOrder
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lsst.ccs.utilities.image.HeaderSpecification.DataType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer.SetGetImagePattern
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.lsst.ccs.utilities.ccd.CCDTransform.PixelType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lsst.ccs.utilities.ccd.image.data.RawImageData.BitsPerPixel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lsst.ccs.utilities.ccd.SegmentReadOutOrder
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lsst.ccs.utilities.image.HeaderSpecification.DataType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer.SetGetImagePattern
Returns an array containing the constants of this enum type, in the order they are declared.

W

write(int, ByteBuffer) - Method in class org.lsst.ccs.utilities.image.FitsFileWriter
Write the actual image data to the file.
writeFitsFiles() - Method in class org.lsst.ccs.utilities.image.viewer.ImageWithGeometryViewer
 
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